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Reference
reference from GATK bundle - please visit ftp.
reference hg19 from google cloud
GATK Bundle
reference from GATK bundle - please visit ftp and download two files below. dbsnp_138.hg19.vcf.gz Mills_and_1000G_gold_standard.indels.hg19.sites.vcf.gz
Tools
samtools
bwa-0.7.17.tar.bz2
picard
GATK4
snpEff